# DRAGEN TSO 500 v2.5

- [Introduction to DRAGEN TSO 500 Analysis Software v2.5.x](/dragen-tso-500-guides/dragen-tso-500-v2.5/introduction-to-dragen-tso-500-analysis-software-v2.5.x.md)
- [Getting Started](/dragen-tso-500-guides/dragen-tso-500-v2.5/getting-started.md)
- [Installation of 2.5.3 on Standalone DRAGEN Server](/dragen-tso-500-guides/dragen-tso-500-v2.5/getting-started/installation-of-2.5.3-on-standalone-dragen-server.md)
- [Installation of v2.5.4 on Standalone DRAGEN Server](/dragen-tso-500-guides/dragen-tso-500-v2.5/getting-started/installation-of-v2.5.4-on-standalone-dragen-server.md)
- [Getting Started on Illumina Connected Analytics](/dragen-tso-500-guides/dragen-tso-500-v2.5/getting-started/getting-started-on-illumina-connected-analytics.md)
- [Run Planning](/dragen-tso-500-guides/dragen-tso-500-v2.5/run-planning.md)
- [Sample Sheet Introduction](/dragen-tso-500-guides/dragen-tso-500-v2.5/run-planning/sample-sheet-introduction.md)
- [Sample Sheet Requirements](/dragen-tso-500-guides/dragen-tso-500-v2.5/run-planning/sample-sheet-requirements.md): DRAGEN TSO 500 Analysis Software has optional and required fields that are required in addition to general sample sheet requirements. Follow the steps below to create a valid samplesheet.
- [Sample Sheet Creation in BaseSpace Run Planning tool](/dragen-tso-500-guides/dragen-tso-500-v2.5/run-planning/sample-sheet-creation-in-basespace-run-planning-tool.md)
- [Sample Sheet Templates](/dragen-tso-500-guides/dragen-tso-500-v2.5/run-planning/sample-sheet-templates.md): Sample Sheet templates for TSO 500 v2.5.x standalone DRAGEN server and ICA manual launch analysis can be found in the table below. For auto-launch compatible sample sheets, use BaseSpace Run Planner.
- [Launching Analysis](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis.md)
- [Analysis Launch on Standalone DRAGEN Server](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-standalone-dragen-server.md)
- [Command-Line Options](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-standalone-dragen-server/command-line-options.md)
- [Run on Multiple DRAGEN Servers](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-standalone-dragen-server/run-on-multiple-dragen-servers.md)
- [Analysis Launch on ICA](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-ica.md)
- [Auto-Launch of DRAGEN TSO 500 Analysis on ICA](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-ica/auto-launch-of-dragen-tso-500-analysis-on-ica.md)
- [Manual Launch of DRAGEN TSO 500 Analysis on ICA](/dragen-tso-500-guides/dragen-tso-500-v2.5/launching-analysis/analysis-launch-on-ica/manual-launch-of-dragen-tso-500-analysis-on-ica.md)
- [Analysis Output](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output.md)
- [DNA Output](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output/dna-output.md)
- [HRD and GIS Outputs](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output/dna-output/hrd-and-gis-outputs.md)
- [RNA Output](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output/rna-output.md)
- [Combined Variant Output](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output/combined-variant-output.md)
- [Metrics Output](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-output/metrics-output.md)
- [Analysis Methods](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods.md)
- [FASTQ Generation](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/fastq-generation.md)
- [DNA Analysis Methods](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/dna-analysis-methods.md)
- [Block List](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/dna-analysis-methods/block-list.md)
- [RNA Analysis Methods](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/rna-analysis-methods.md)
- [Quality Control](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/quality-control.md)
- [DNA Expanded Metrics](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/quality-control/dna-expanded-metrics.md)
- [RNA Expanded Metrics](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/quality-control/rna-expanded-metrics.md)
- [Contamination](/dragen-tso-500-guides/dragen-tso-500-v2.5/analysis-methods/quality-control/contamination.md)
- [Troubleshooting](/dragen-tso-500-guides/dragen-tso-500-v2.5/troubleshooting.md)